# Compare Paychex Flex vs Square Payroll 2026 | Capterra

> Unsure of what to choose? Check Capterra to compare Paychex Flex and Square Payroll based on pricing, features, product details, and verified reviews.

Source: https://www.capterra.com/compare/119841-170266/Paychex-Flex-vs-Square-Payroll

---

# Paychex Flex vs Square Payroll Features and Cost Comparison

Last updated May 4th, 2026

Provider data verified by our Software Research team, and reviews  
moderated by our Reviews Verification team.[Learn more](https://www.capterra.com/our-story/)

Your comparison:

Paychex FlexSquare Payroll2/4 selected

[Paychex Flex](https://www.capterra.com/p/119841/Paychex-Flex/)[4.2 (1,804)](https://www.capterra.com/p/119841/Paychex-Flex/reviews/)

[Square Payroll](https://www.capterra.com/p/170266/Square-Payroll/)[4.7 (621)](https://www.capterra.com/p/170266/Square-Payroll/reviews/)

[## Paychex Flex](https://www.capterra.com/p/119841/Paychex-Flex/)[4.2 (1,804)](https://www.capterra.com/p/119841/Paychex-Flex/reviews/)

Starting Price

Contact vendor

Value-for-Money

4

Functionality

4.1

Ease of Use

4.2

Customer Service

3.9

Reviews Sentiment

Based on [1,804 reviews](#user-reviews)

Positive

1,425

Neutral

236

Negative

143

[## Square Payroll](https://www.capterra.com/p/170266/Square-Payroll/)[4.7 (621)](https://www.capterra.com/p/170266/Square-Payroll/reviews/)

Starting Price

$35.00/month

Value-for-Money

4.6

Functionality

4.5

Ease of Use

4.6

Customer Service

4.4

Reviews Sentiment

Based on [621 reviews](#user-reviews)

Positive

591

Neutral

18

Negative

12

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## Send this comparison chart to my inbox

### Fill out the form and we'll send a list of the top-rated software based on real user reviews directly to your inbox.

What’s your intended use case?

## Summary

* * *

Key features rated by users

Features selected based on 35,312 reviews from payroll software users.  
about the Fit Score methodology.

Fit Score methodology

Our Fit Score reflects how reviewers rate a product’s performance against a set of features reviewers rate as most important. A higher score indicates the product is rated better in delivering what reviewers most care about.

  

If the Fit Score is not shown for a specific product, that only means there are currently not enough relevant data points to develop a meaningful score. It does not indicate that the product should be excluded from further evaluation. Best for Methodology

82%Fit

Feature ratings

Payroll Management

4.3

Direct Deposit

4.7

Tax Compliance

4.4

W-2 Preparation

4.5

Payroll Reporting

4.3

83%Fit

High performer

Feature ratings

Payroll Management

4.7

Direct Deposit

4.8

Tax Compliance

4.6

W-2 Preparation

4.7

Payroll Reporting

4.7

User satisfaction

User satisfaction

4.2

User reviews[1,804](https://www.capterra.com/p/119841/Paychex-Flex/reviews/)

Ease of use

4.2

Functionality

4.1

Value for money

4.0

Customer support

3.9

User satisfaction

4.7

User reviews[621](https://www.capterra.com/p/170266/Square-Payroll/reviews/)

Ease of use

4.6

Functionality

4.5

Value for money

4.6

Customer support

4.4

Price starts from

Price starts from

\--

-   Free version
-   Free trial

Price starts from

$35Other, Per Month

-   Free version
-   Free trial

Best for

Best for

Business Owners, Human Resources Professionals, CRHOs, CEOs, CFOs, of all business sizes use Paychex for HR, payroll, and benefits solutions to streamline and automate HR administrative tasks.

Best for

Small to medium size business employers with up to 100 employees. Salaried or hourly employees. Pay W-2 employees, 1099 contractors, or both.

## User reviews

Pros & cons

KP

Kevin P.

Sales

> "The employee self-service portal is a major time-saver; staff can view pay stubs, update personal information, manage direct deposit accounts, and access tax documents..."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7163999)

Nicholas D.

Project Manager

> "We don't use time clocks, as we're all salaried, so no tracking needed, but the communication features are somewhat lacking, and we do not use any to communicate with..."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7106298)

Nicholas D.

Project Manager

> "It's great for users as well, as it allows us, as users, to manage retirement (401k), manage direct deposit, and even manage taxes, right from the employee login."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7106298)

JL

Jill L.

HR Manager

> "We will be using time tracking through Paylocity and Paycheck does not offer this feature. Once you are no longer a member, you need to contact them to have paycheck..."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7025150)

Mai M.

Managing Director

> "It's become the perfect option for our small businesses by automating tax data, self-service access via desktop or mobile app, and all the additional workforce..."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7120935)

VR

Verified Reviewer

Director

> "Additionally, the reporting capabilities, while robust, are not always user-friendly and may require extra effort to extract the exact data needed."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7137171)

Deborah T.

Controller

> "When we first began with Paychex Flex the program needed tweaking to suit the construction industry, multiple job locations which meant multiple taxing jurisdictions..."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7108403)

Collette K.

Practice Manager

> "Good until an error occurred with payment to a third party, this became lengthy to get a resolution. If this had not occurred and the other company not offered..."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7118074)

VR

Verified Reviewer

Director

> "Another strong point is its flexibility and automation—features like automatic tax calculations, compliance support, and customizable reporting reduce manual work and..."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7137171)

VR

Verified Reviewer

Finance and Accounting

> "The only bug I have ever ran into is the authentication servers were down for an entire day, so we were unable to login."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7128105)

VR

Verified Reviewer

Director

> "The employee self-service portal is also useful, allowing staff to access pay stubs, tax forms, and personal information without constant HR involvement."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7137171)

VR

Verified Reviewer

Human Resource Manager

> "I would not trust them with proper tax filings, they have very basic reports and you have to call for any report that may be a regular report for you but is not one of..."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___6869025)

CK

Christina K.

Manager

> "Paychex Flex is a great way for staff to be able to see their hours within a certain pay period and for us as manager to communicate effectively with them."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7155360)

VR

Verified Reviewer

Packaging Designer

> "The UI felt a bit dated, and some users reported having trouble finding specific things within their portal."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7115452)

VR

Verified Reviewer

Owner

> "What I liked most about Paychex Flex was its user-friendly interface and the convenience of managing payroll, benefits, and employee information all in one platform."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7148774)

CS

Charlene S.

Office Manager Bookkeeper

> "They over charge for everything. When you try to dispute items they have already charged your bank account, and it's too late."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7117479)

VR

Verified Reviewer

Director

> "What stands out most about Paychex Flex is how it brings multiple HR, payroll, and benefits functions into one intuitive platform."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7137171)

MA

Mattias A.

Field Strategist

> "Never really figured out what it was, but it was a minor inconvenience if anything that we had to tell each employee to force stop the app/clear cache to log in again..."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7094267)

MA

Mihaela A.

Sales Manager

> "Overall, Paychex is a reliable and professional payroll solution that saves time, improves accuracy, and supports businesses with their payroll and HR needs."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7073796)

KP

Kevin P.

Sales

> "The initial setup and onboarding process is more involved than expected and often requires hand-holding from a Paychex rep."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7163999)

VR

Verified Reviewer

Owner

> "The platform made payroll and HR tasks more efficient with its easy-to-use interface and centralized tools, though there were occasional navigation and support..."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7148774)

SH

Sheila H.

Firm Administrator

> "Many tax failures that we ended up paying penalties for. Continued to bill us after contracts were terminated and would not respond to inquiries."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7123217)

DW

Dalton W.

Salesman

> "It’s a great application for our work in a small business setting for us the workers and owners to stay communicated on our pay rate, and tracking how much vacation..."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7052586)

Sushant G.

CFO

> "The interface also feels outdated at times, which makes the overall experience more frustrating than it needs to be."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7156543)

VR

Verified Reviewer

Director

> "Running payroll is generally straightforward, and the automation features—especially for tax calculations and compliance—add a lot of value and reduce manual effort."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7137171)

TW

Tracy W.

Chief Financial officer

> "In my time working with them I rarely ever encountered anyone who was able to immediately fix an issue without involving other staff members"

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7127141)

VR

Verified Reviewer

Director

> "That said, there is a bit of a learning curve when it comes to navigating some of the more advanced features, particularly reporting and customization. Once you get..."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7137171)

ES

Erik S.

CEO

> "The system is hard to manage to obtain reports and record or duplicate pay stubs or W2s."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___6887070)

KP

Kevin P.

Sales

> "Reporting is robust, with a wide library of pre-built reports plus the ability to customize."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7163999)

SH

Sheila H.

Firm Administrator

> "Keep sending us new products to sign up for, but their current products do not work."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7123217)

KG

Kylee G.

Director of Youth and Intern Ministries

> "It has several self-service tools for employees, automatic payroll tax compliance, and several other features."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7003112)

William B.

Manager

> "Set up process was a bit complicated, as well as the process of leaving the service."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7130672)

Mai M.

Managing Director

> "We love how fast and automated payroll processing has become for our employees with direct deposit and same-day payment."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7120935)

Sushant G.

CFO

> "The biggest issue for me is the UX and overall design of the platform."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7156543)

EH

Elizabeth H.

Receptionist

> "I like that i can see the hours i am working in real time. so that I can directly see what i am going to be paid for that week."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7069481)

AB

Aaron B.

Human Resources Manager

> "The website was completely unusable when trying to process payroll. If you had to make any adjustments, it could take a day of just lagging since everyone else was..."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___6517227)

AB

Aaron B.

Human Resources Manager

> "I think one of the best features of Paychex Flex is the wide range of features it offers, including payroll processing, HR management tasks, and attendance tracking."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___6517227)

CW

Colby W.

Manager

> "Logging in would take forever and once in, it was difficult to navigate through their system to find my paycheck"

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7039053)

KP

Kevin P.

Sales

> "For a growing business that values having a full-service provider with deep payroll and compliance expertise, it's a solid choice."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7163999)

VR

Verified Reviewer

Operational Manager

> "During use, the system seems a little message heavy, disrupting focus on necessary work flow."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7009418)

Alexander G.

Kennel Technician

> "I was on the receiving end of this product when my job was allowing us to clock in and pay us through this software and it was very easy to see my paystubs."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7075113)

KY

Kristal Y.

Assistant Manager and Bookkeeper

> "I do not see what I make an hour; I believe paychex has is set up for a dollar amount each pay week, and it is a salary pay, I do not think they can do it a different..."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___6551421)

KF

Kimberly F.

Financial Program Assistant

> "My overall experience has been good not much great it really help me I can do multiple work with it like handling my tax or time off requests and it has limited..."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___6598016)

DO

Diana O.

Accounting

> "sometimes hard to download or reinstate the login information. When email sent credentials not received"

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7046606)

TS

Tiffany S.

Director

> "I personally like that I am able to approve my teams hours and that I can break it down by pay week or pay period."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___6856622)

TB

Theresa B.

CEO

> "When I downsized I had some issues that they were not able to resolve."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7105366)

Zameeya J.

Doctor

> "Ease of use and I love that I can keep track of my payment schedule and have access to all of my hours worked and documents."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7116336)

JB

Jillian B.

Vice President of Human Resources

> "Everything really. If I were to pick one thing, I would say that the disparate systems within systems is very convoluted and causes significant issues with reporting..."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___6664336)

KP

Kevin P.

Sales

> "Having a dedicated payroll specialist assigned to the account is a nice touch you don't get with every provider."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7163999)

MM

Myron M.

Fitness Coordinator

> "This can cause my clock in and meal times to be incorrect."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7037436)

JH

Jamie H.

Owner

> "My overall experience would be although paychecks flex has one of the best platforms for payroll in HR."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7087671)

VR

Verified Reviewer

Human Resource Manager

> "Customer service is not very pleasant to deal with when I had to call and place complaints for mistakes on Paychex's part. "

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___6869025)

JM

Jasmine M.

Store Manager

> "It provides the core functionality needed in a clear, user-friendly way while offering additional features that grow with the business. While not perfect, it strikes a..."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7003945)

DJ

Derek J.

Owner

> "The invoicing gets obfuscated so you don't know what money is being charged for, and you have to be on top of them to not make errors or mistakes."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___6563754)

MM

Meghana M.

Adminstrator

> "The system is easy to refer back to and has made it simple to track and manage employee time off and PTO."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7149306)

MM

Meghana M.

Adminstrator

> "Everytime I have issue , I have to call and explain the representative from begining"

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7149306)

AM

Audra M.

office mgr

> "Best feature I like is the to date pay clock, I have had so many great feedbacks on ths feature"

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7101755)

EM

Erica M.

PT Aide

> "Sometimes you're navigating through the website or app and it feels like it's super dated and not always user friendly."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___6843221)

MM

Myron M.

Fitness Coordinator

> "Using the Hiring interface has shown to be very helpful in selecting potential candidates for positions at my facility."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7037436)

DJ

Derek J.

Owner

> "They're a decent payroll provider, but the lack of transparency with invoicing and dashboard navigation issues are concerning."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___6563754)

PL

Peter L.

Director of Human Resources

> "Some automations would be more helpful but overall I am satisfied and enjoy working with the customer success and support departments"

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7137121)

DA

David A.

COO

> "Unfortunately, there software is lacking coming into the new age and it extremely outdated."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7067935)

Cynthia R.

Clinician

> "Paychex is easy to use and has made it more effective to keep track of my benefits and payroll."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7138646)

GV

Giovanni V.

Sales Coordinator

> "Occasionally, the interface can be slow, especially during high-traffic times."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___6838907)

FA

Felicia A.

HR Generalist

> "I like the ability to streamline time and attendance with onboarding and employee information."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7056663)

CC

Constance C.

President

> "In the process, they gave past employees who no longer worked for us access to enroll in our health benefits which we paid for."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#SoftwareAdvice___6813728)

FG

Francesco G.

Full time instuctor

> "It's okay, its not my favorite time and attendance scorecard system, they do make the information and language straightforward however there are better options on the..."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___6678926)

YB

YURI B.

hr

> "It seems like there are a lot of new features it still doesn't have."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7109478)

GV

Giovanni V.

Sales Coordinator

> "Paychex Flex has made managing payroll and HR functions much easier for our company."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___6838907)

Sadie B.

Operations Manager

> "I have a great customer support agent now but the last few I have had were less than helpful and hard to reach"

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7144418)

VR

Verified Reviewer

Payroll clerk

> "It also offers good self-service options for employees."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7125724)

CS

Cameron S.

President

> "I had to constantly monitor the payroll reports to make sure they were accurate, then report the errors, explain to employees why their paychecks weren't correct, then..."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#GetApp___5094881)

Andrea H.

Office Manager

> "The ease of use, great communication, great customer support and overall, a great tool to get all HR duties completed in an efficient yet user friendly manner."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7079675)

KY

Kristal Y.

Assistant Manager and Bookkeeper

> "it was very difficult to change my personal information that my employer had entered in wrong, not all my paystubs are available to view."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___6551421)

VR

Verified Reviewer

Test Technician

> "Intuitive software to see the paychecks and how much sick time off I have! If you are looking for a simple payroll tracker, Paycheck Flex would be a great tool for it."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___6548833)

Nathalie S.

Account Manager

> "This means that when you attempt to login from your new phone and the system doesn't recognize it, it will naturally attempt to verify your identity, but unfortunately..."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___6111786)

William B.

Manager

> "Paychex Flex.is a great option for a small to medium sized company."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___7130672)

CC

Constance C.

President

> "It is their MO to pretend they never received something or that you didn’t properly notify them until you provide them with the proof that you did everything they..."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#SoftwareAdvice___6813728)

MJW

Mary Jane W.

Office Assistant

> "One of the standout features is the ability to view and manage payroll on the go."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___6509717)

CR

Ciara R.

HR

> "I don’t like the issues when submitting payroll and the lack of communication when there are errors."

[See full review](https://www.capterra.com/p/119841/Paychex-Flex/#Capterra___6675781)

[View Reviews](https://www.capterra.com/p/119841/Paychex-Flex/reviews/)

ES

Emily S.

Owner

> "I like that staff can clock in and clock out for their shifts with Square Payroll, their tips are automatically added to..."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___6851283)

CBCC

Carolyn Black-Coffey C.

Owner, President

> "The transition was harder for me, as my former payroll company had a more manual system, and the formatting process was..."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___6830560)

CBCC

Carolyn Black-Coffey C.

Owner, President

> "Square has been immeasurably helpful with getting and keeping me organized in regard to payroll."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___6830560)

VR

Verified Reviewer

President

> "They have screwed up my tax filings every month since switching to Square Payroll. "

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#GetApp___5094877)

MS

Michelle S.

Owner

> "I also love that they automatically withhold and remit Payroll Taxes."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___6592663)

JD

Jammi D.

owner

> "it is a little pricey for a app compared to other payroll apps"

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___6043153)

PO

Paola O.

HR Manager

> "I like this payroll product as it offers amazing payroll features."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___6625742)

MH

Matthew H.

general manager

> "This does not matter to me, but it does not do the HR items that Paychex and ADP do. If you need a more comprehensive..."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___4527222)

KG

Kim G.

Brand management

> "User friendly and customer support is very helpful."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___7081614)

BB

Blake B.

owner

> "At first it was a little hard to get used too."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___6294458)

VR

Verified Reviewer

Admin

> "The automation of tax filings and payments lifted a huge burden off our shoulders, ensuring compliance without the hassle."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___6227823)

PB

Petula B.

Owner/ CEO

> "Not sure why it's not allowing me to add my cashapp a payment option, but I'm sure it's something I'm not doing correctly."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___2962818)

MS

Michelle S.

Owner

> "It was intuitive and easy to use to begin with, but they keep adding products and improving functionality."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___6592663)

DW

David W.

President

> "My only concern is the ease at which I can pay the same employee different pay rates- for doing different jobs. While I..."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___2860844)

VR

Verified Reviewer

President

> "Running payroll is simple and I could automate the entry of payroll data to avoid mistakes."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#GetApp___5094877)

Chandra D.

Owner

> "I was super disappointed that I had to create a NEW Square account just to get access to the plan again."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___3048452)

JT

Joseph T.

CEO

> "I also liked how accurate and without delays the payroll payments are executed, this way fantastic because it allowed our..."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___4544619)

KD

Kimbra D.

Head server / manager at night

> "The only thing I don't like is when I need to change something it won't let me. If I make a mistake it's hard to..."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___2934613)

PO

Paola O.

HR Manager

> "It is effortless to deploy and customization is easy too."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___6625742)

AG

Alysia G.

Self

> "Limited reports “. And not great for larger business."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___3571174)

JT

Joseph T.

CEO

> "I loved the way this platform allows me to use the trip monitoring function, this function was very important to me since..."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___4544619)

ST

Stefani T.

CEO

> "The inability to schedule same day payments, but there isn't really a Payroll software that does this quite right."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___2462707)

MD

Maggie D.

Owner

> "Overall, the software is a great value and it's money well spent."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___7033695)

CG

Cameron G.

Owner

> "I was struggling to do payroll by myself."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___2958831)

MD

Maggie D.

Owner

> "The system is incredibly easy to set up and run."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___7033695)

RB

Richard B.

Owner

> "It doesn't matter if I am in my high season, or my low season, it takes the same amount of time because of the..."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___2860851)

JT

Joseph T.

CEO

> "I liked the automated service to send payment report to our employees mail, this helped a lot so that our employees could..."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___4544619)

Mike F.

Owner

> "The employer dashboard and features are pretty basic and may take some to get used to what functionality is available."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___2827348)

PW

Patrick W.

Self

> "The ability to pay manage and keep track of payroll and documents makes square payroll a great tool for any small or..."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___4543221)

HM

Heather M.

shop owner

> "I found it expensive for a very small business."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___3340865)

CA

Christian A.

Manager

> "I liked their idea of only paying when you take a payment, so I tried Square Payroll."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___6331478)

JN

Jessica N.

Owner

> "Now it is more difficult to view timecards if you notice a mistake when importing"

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___2860611)

CBCC

Carolyn Black-Coffey C.

Owner, President

> "Very easy to track and import wages."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___6830560)

KM

Karyn M.

Co-Owner

> "The only concern I had was that it was very difficult to get in touch with a live person the few times I had a question."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___2862525)

SS

Shannon S.

Operator

> "I've used square payroll for over 7 years after using several other services like Quickbooks, paychex, ADP and nothing..."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___4583365)

CG

Cameron G.

Owner

> "Haven't found any issues that are troublesome."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___2958831)

CO

Camila O.

Managing Partner

> "I really like Square Payroll for the ability it gives me to manage my payroll in an organized manner."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___4402753)

AA

Adriana A.

Owner

> "One downside might be is if you have a large organization with a lot of employees."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___2432942)

OA

Oluwatobiloba A.

Manager

> "I sincerely like the comprehensive payroll system and it's solution that can help business grow both online and offline."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___4305107)

BH

Bryan H.

Owner

> "We were very nervous about taxes and getting folks paid correctly not being business owners before. "

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___2907496)

KD

Kimbra D.

Head server / manager at night

> "I love that this program it calculates your state and federal taxes, lets me offer direct deposit, tracks hrs and..."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___2934613)

AW

Allison W.

GM

> "It is crazy Square won't implement this option and is a huge annoyance."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___2778860)

JD

Jammi D.

owner

> "square payroll has one of the best apps with easy to use system"

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___6043153)

SZ

Sheldon Z.

Ceo

> "If you have trouble it’s tough to get ahold of someone."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___2861076)

Troy B.

Marketing Manager

> "Vacation/Leave Tracking has truly increased the productivity of payroll and bookkeeping."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___3705912)

LC

Linda C.

owner

> "Very frustrating"

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___2816069)

JC

Jenni C.

Owner

> "I like all of Square Payroll. If I had to choose I would say how easy it is to use just amazes me."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___6227674)

SW

Shannon W.

Acupuncturist/maker

> "We have had errors."

[See full review](https://www.capterra.com/p/170266/Square-Payroll/#Capterra___2693412)

[View Reviews](https://www.capterra.com/p/170266/Square-Payroll/reviews/)

## User interface

[Paychex Flex](https://www.capterra.com/p/119841/Paychex-Flex/)

4.16 (1,804)

[Square Payroll](https://www.capterra.com/p/170266/Square-Payroll/)

4.66 (621)

## Connect with a Capterra advisor for a free 15-minute consultation

Get a personalized software list aligned to your business needs with guidance from our expert advisors. Our team has helped 1 million+ businesses like yours find options that fit their needs.

### Features

Do these products fit your needs?

Prioritize real-user-identified key features according to your needs to find your best fit.

\--% Fit

vs

\--% Fit

1099 Preparation

207

Important

401(k) Tracking

150

Important

Access Controls/Permissions

120

Important

Paychex Flex

Top features

36/44

-   1099 Preparation
-   401(k) Tracking
-   Access Controls/Permissions
-   Accounting Integration
-   Activity Dashboard
-   AI Copilot
-   AI/Machine Learning
-   Alerts/Notifications
-   API
-   Approval Process Control
-   Audit Management
-   Auto Update
-   Benefits Management
-   Calendar Management
-   Chatbot
-   Check Printing
-   Compensation Management
-   Compliance Management
-   Customizable Reports
-   Data Import/Export
-   Direct Deposit
-   Document Management
-   Employee Database
-   Employee Onboarding
-   Employee Profiles
-   Generative AI
-   Mobile Access
-   Multi-Country
-   Multi-State
-   Payroll Management
-   Payroll Outsourcing
-   Payroll Reporting
-   Reimbursement Management
-   Reminders
-   Reporting & Statistics
-   Self Service Portal
-   Tax Calculation
-   Tax Compliance
-   Third-Party Integrations
-   Time & Attendance
-   Vacation/Leave Tracking
-   W-2 Preparation
-   Wage Garnishment
-   Workflow Automation

[See all features](https://www.capterra.com/p/119841/Paychex-Flex/#features)

Square Payroll

23/44

-   1099 Preparation
-   401(k) Tracking
-   Access Controls/Permissions
-   Accounting Integration
-   Activity Dashboard
-   AI Copilot
-   AI/Machine Learning
-   Alerts/Notifications
-   API
-   Approval Process Control
-   Audit Management
-   Auto Update
-   Benefits Management
-   Calendar Management
-   Chatbot
-   Check Printing
-   Compensation Management
-   Compliance Management
-   Customizable Reports
-   Data Import/Export
-   Direct Deposit
-   Document Management
-   Employee Database
-   Employee Onboarding
-   Employee Profiles
-   Generative AI
-   Mobile Access
-   Multi-Country
-   Multi-State
-   Payroll Management
-   Payroll Outsourcing
-   Payroll Reporting
-   Reimbursement Management
-   Reminders
-   Reporting & Statistics
-   Self Service Portal
-   Tax Calculation
-   Tax Compliance
-   Third-Party Integrations
-   Time & Attendance
-   Vacation/Leave Tracking
-   W-2 Preparation
-   Wage Garnishment
-   Workflow Automation

[See all features](https://www.capterra.com/p/170266/Square-Payroll/#features)

### Recognition

Paychex Flex is recognized as a top-rated tool in 5 Capterra Shortlist reports

Square Payroll is recognized as a top-rated tool in 3 Capterra Shortlist reports

### Deployment & support

Paychex Flex

Deployment

-   Cloud, SaaS, Web-Based
-   Desktop Mac
-   Desktop Windows
-   Desktop Linux
-   On-Premise Windows
-   On-Premise Linux
-   Desktop Chromebook
-   Mobile Android
-   Mobile iPhone
-   Mobile iPad

Support

-   Email/Help Desk
-   FAQs/Forum
-   Knowledge Base
-   Phone Support
-   24/7 (Live rep)
-   Chat

Training

-   In Person
-   Live Online
-   Webinars
-   Documentation
-   Videos

Square Payroll

Deployment

-   Cloud, SaaS, Web-Based
-   Desktop Mac
-   Desktop Windows
-   Desktop Linux
-   On-Premise Windows
-   On-Premise Linux
-   Desktop Chromebook
-   Mobile Android
-   Mobile iPhone
-   Mobile iPad

Support

-   Email/Help Desk
-   FAQs/Forum
-   Knowledge Base
-   Phone Support
-   24/7 (Live rep)
-   Chat

Training

-   In Person
-   Live Online
-   Webinars
-   Documentation
-   Videos

### Company Details

Paychex Flex

-   By Paychex
-   Located in United States
-   Founded in 1971

Square Payroll

-   By Square
-   Located in United States
-   Founded in 2009

## Popular Comparisons

[Paychex Flex](https://www.capterra.com/p/119841/Paychex-Flex/)[4.16 (1,804)](https://www.capterra.com/p/119841/Paychex-Flex/reviews/)

vs

[Deel](https://www.capterra.com/p/205015/Deel/)[4.85 (4,283)](https://www.capterra.com/p/205015/Deel/reviews/)

Contact vendor for pricing

Price

$5/month

4.1

Features

4.8

4.2

Ease of Use

4.8

[View full comparison](https://www.capterra.com/compare/119841-205015/Paychex-Flex-vs-Deel)

[Square Payroll](https://www.capterra.com/p/170266/Square-Payroll/)[4.66 (621)](https://www.capterra.com/p/170266/Square-Payroll/reviews/)

vs

[Deel](https://www.capterra.com/p/205015/Deel/)[4.85 (4,283)](https://www.capterra.com/p/205015/Deel/reviews/)

$35/month

Price

$5/month

4.5

Features

4.8

4.6

Ease of Use

4.8

[View full comparison](https://www.capterra.com/compare/170266-205015/Square-Payroll-vs-Deel)

[Paychex Flex](https://www.capterra.com/p/119841/Paychex-Flex/)[4.16 (1,804)](https://www.capterra.com/p/119841/Paychex-Flex/reviews/)

vs

[Rippling](https://www.capterra.com/p/172127/Rippling/)[4.86 (4,817)](https://www.capterra.com/p/172127/Rippling/reviews/)

Contact vendor for pricing

Price

$8/month

4.1

Features

4.8

4.2

Ease of Use

4.9

[View full comparison](https://www.capterra.com/compare/119841-172127/Paychex-Flex-vs-Rippling)

[Square Payroll](https://www.capterra.com/p/170266/Square-Payroll/)[4.66 (621)](https://www.capterra.com/p/170266/Square-Payroll/reviews/)

vs

[Rippling](https://www.capterra.com/p/172127/Rippling/)[4.86 (4,817)](https://www.capterra.com/p/172127/Rippling/reviews/)

$35/month

Price

$8/month

4.5

Features

4.8

4.6

Ease of Use

4.9

[View full comparison](https://www.capterra.com/compare/170266-172127/Square-Payroll-vs-Rippling)

[Paychex Flex](https://www.capterra.com/p/119841/Paychex-Flex/)[4.16 (1,804)](https://www.capterra.com/p/119841/Paychex-Flex/reviews/)

vs

[RUN Powered by ADP](https://www.capterra.com/p/185859/RUN/)[4.58 (1,430)](https://www.capterra.com/p/185859/RUN/reviews/)

Contact vendor for pricing

Price

Contact vendor for pricing

4.1

Features

4.5

4.2

Ease of Use

4.6

[View full comparison](https://www.capterra.com/compare/119841-185859/Paychex-Flex-vs-RUN)

[Square Payroll](https://www.capterra.com/p/170266/Square-Payroll/)[4.66 (621)](https://www.capterra.com/p/170266/Square-Payroll/reviews/)

vs

[RUN Powered by ADP](https://www.capterra.com/p/185859/RUN/)[4.58 (1,430)](https://www.capterra.com/p/185859/RUN/reviews/)

$35/month

Price

Contact vendor for pricing

4.5

Features

4.5

4.6

Ease of Use

4.6

[View full comparison](https://www.capterra.com/compare/170266-185859/Square-Payroll-vs-RUN)

[Paychex Flex](https://www.capterra.com/p/119841/Paychex-Flex/)[4.16 (1,804)](https://www.capterra.com/p/119841/Paychex-Flex/reviews/)

vs

[Paylocity](https://www.capterra.com/p/86714/WebPay/)[4.34 (1,846)](https://www.capterra.com/p/86714/WebPay/reviews/)

Contact vendor for pricing

Price

Contact vendor for pricing

4.1

Features

4.3

4.2

Ease of Use

4.3

[View full comparison](https://www.capterra.com/compare/86714-119841/WebPay-vs-Paychex-Flex)

[Square Payroll](https://www.capterra.com/p/170266/Square-Payroll/)[4.66 (621)](https://www.capterra.com/p/170266/Square-Payroll/reviews/)

vs

[Paylocity](https://www.capterra.com/p/86714/WebPay/)[4.34 (1,846)](https://www.capterra.com/p/86714/WebPay/reviews/)

$35/month

Price

Contact vendor for pricing

4.5

Features

4.3

4.6

Ease of Use

4.3

[View full comparison](https://www.capterra.com/compare/86714-170266/WebPay-vs-Square-Payroll)

[Paychex Flex](https://www.capterra.com/p/119841/Paychex-Flex/)[4.16 (1,804)](https://www.capterra.com/p/119841/Paychex-Flex/reviews/)

vs

[ADP Workforce Now](https://www.capterra.com/p/155895/WorkforceNow/)[4.43 (7,219)](https://www.capterra.com/p/155895/WorkforceNow/reviews/)

Contact vendor for pricing

Price

Contact vendor for pricing

4.1

Features

4.3

4.2

Ease of Use

4.3

[View full comparison](https://www.capterra.com/compare/119841-155895/Paychex-Flex-vs-WorkforceNow)

[Square Payroll](https://www.capterra.com/p/170266/Square-Payroll/)[4.66 (621)](https://www.capterra.com/p/170266/Square-Payroll/reviews/)

vs

[ADP Workforce Now](https://www.capterra.com/p/155895/WorkforceNow/)[4.43 (7,219)](https://www.capterra.com/p/155895/WorkforceNow/reviews/)

$35/month

Price

Contact vendor for pricing

4.5

Features

4.3

4.6

Ease of Use

4.3

[View full comparison](https://www.capterra.com/compare/155895-170266/WorkforceNow-vs-Square-Payroll)

[Paychex Flex](https://www.capterra.com/p/119841/Paychex-Flex/)[4.16 (1,804)](https://www.capterra.com/p/119841/Paychex-Flex/reviews/)

vs

[Patriot Software](https://www.capterra.com/p/116050/Patriot-Software/)[4.80 (3,964)](https://www.capterra.com/p/116050/Patriot-Software/reviews/)

Contact vendor for pricing

Price

$17/month

4.1

Features

4.7

4.2

Ease of Use

4.7

[View full comparison](https://www.capterra.com/compare/116050-119841/Patriot-Software-vs-Paychex-Flex)

[Square Payroll](https://www.capterra.com/p/170266/Square-Payroll/)[4.66 (621)](https://www.capterra.com/p/170266/Square-Payroll/reviews/)

vs

[Patriot Software](https://www.capterra.com/p/116050/Patriot-Software/)[4.80 (3,964)](https://www.capterra.com/p/116050/Patriot-Software/reviews/)

$35/month

Price

$17/month

4.5

Features

4.7

4.6

Ease of Use

4.7

[View full comparison](https://www.capterra.com/compare/116050-170266/Patriot-Software-vs-Square-Payroll)