--- title: "7 Best E-commerce Accounting Software Tools (2026) | Capterra" description: "Selling online, in-store, or both? I compared 3,176 Capterra reviews to find the 7 best e-commerce accounting software tools for multi-channel sellers." source_url: "https://www.capterra.com/resources/best-ecommerce-retail-accounting-software-analysis/" page_type: "article" language: "en" publication_date: "2026-09-02" --- # My 7 Best Accounting Software Picks for E-commerce and Retail Businesses in 2026, Based on 3,176 Capterra Reviews Written by: David Jani David JaniAuthor Senior content analyst Experience As a senior analyst, I have spent the last five years covering small-business software, technology deployment, and research... [See bio & all articles](https://www.capterra.com/resources/author/david-jani/) Published September 2, 2026 | Updated on October 23, 2026 17 min read Table of Contents - [How I picked this list](#how-i-picked-this-list) - [QuickBooks Enterprise: best for a dedicated retail edition](#1-quickbooks-enterprise-best-for-a-dedicated-retail-edition-with-built-in-reporting) - [Acumatica Cloud ERP: best for growing omnichannel retailers](#2-acumatica-cloud-erp-best-for-growing-omnichannel-retailers-wanting-native-commerce-connectors-and-a-connected-pos-option) - [Oracle NetSuite: best for retailers ready for a full ERP](#3-oracle-netsuite-best-for-retailers-ready-for-a-full-erp-with-a-native-e-commerce-module) - [Odoo: best for retailers wanting an all-in-one suite](#4-quickbooks-online-best-for-small-e-commerce-sellers-wanting-the-broadest-connector-reach) - [Zoho Books: best for small sellers already using Zoho apps](#5-zoho-books-best-for-small-sellers-already-using-zohos-other-business-apps) - [Odoo: best for retail POS, inventory, and accounting](#6-odoo-best-for-retailers-wanting-pos-inventory-e-commerce-and-accounting-in-one-modular-suite) - [Sage Accounting: best for solo and small e-commerce sellers](#7-sage-accounting-best-for-solo-and-small-e-commerce-sellers-wanting-simple-marketplace-bookkeeping) - [What I found comparing marketplace and POS integrations](#what-i-found-comparing-marketplace-and-pos-integrations-across-the-7-tools) **TL;DR:** _In this article, I highlight seven of the best_ [_accounting software_](https://www.capterra.com/accounting-software/) _tools used for e-commerce and retail businesses. This is informed by 3,176 Capterra reviews collected over the last two years from verified users, as well as recent marketplace data researched in August 2026._ When you need to track accounts for retail or e-commerce, there are tasks that require more than a conventional accounting system. When selling products, your accounting team may need to track factors such as multi-channel sales, inventory, and taxes without overloading them with manual effort, which is where e-commerce accounting software differs from conventional systems. With e-commerce platforms, the question of point of sale (POS) also needs to be thought about, allowing you to run a system that is compatible and that doesn’t add extra complexity. This is why I’ve looked at the best-rated products on Capterra for retail accounting to understand what experienced users find works (or doesn’t). This considers software on Capterra’s [Accounting Software Shortlist](https://www.capterra.com/accounting-software/shortlist/) and verified user reviews, which I checked against details on the vendor’s own website.  The seven tools I picked in this process stand out for retail and e-commerce thanks to their essential features, including POS plugins, the ability to manage tracking for multi-channel or omnichannel sales, and inventory management. They also receive some of the best feedback signals from reviewers for these purposes. The list below is arranged in ranking order.  ## The 7 best accounting software tools for e-commerce and retail at a glance | Product | Best for | Rating (in last two years) | Reviews (in last two years) | Starting price | | --- | --- | --- | --- | --- | | [QuickBooks Enterprise](https://www.capterra.com/p/174984/QuickBooks-Enterprise/) | Dedicated retail edition with built-in reporting | 4.56 | 547 | $2,210/year (Gold, 1 user, per Capterra's own listing); multi-location and advanced pricing rules need Platinum or higher | | [Acumatica Cloud ERP](https://www.capterra.com/p/96371/Acumatica-Cloud-ERP/) | Omnichannel retailers wanting native commerce connectors and a connected POS option | 4.53 | 113 | Contact vendor | | [NetSuite](https://www.capterra.com/p/135757/NetSuite/) | Retailers ready for a full ERP with a native e-commerce module | 4.46 | 521 | Contact vendor | | [QuickBooks Online](https://www.capterra.com/p/190778/QuickBooks-Online/) | Small e-commerce sellers wanting the broadest connector reach | 4.32 | 1,228 | $38/month (Simple Start) | | [Zoho Books](https://www.capterra.com/p/163115/Zoho-Books/) | Small sellers already using Zoho's other business apps | 4.31 | 45 | $15/month (Standard, billed annually; $20/month billed monthly) | | [Odoo](https://www.capterra.com/p/135618/Odoo/) | POS, inventory, e-commerce, and accounting in one suite | 4.26 | 397 | $31.10/user/month (Standard, billed annually); discounted to $24.90/user/month for the first year | | [Sage Accounting](https://www.capterra.com/p/168740/Sage-One-UK/) | Solo and small e-commerce sellers wanting simple marketplace bookkeeping | 4.00 | 299 | $20/month (Accounting Start) | _Ratings and review counts reflect verified Capterra reviews from the preceding 24 months (August 2024 to August 2026). Pricing was checked against vendor sites and Capterra's own product pages in August 2026._ ## How I picked this list To build this list, I selected products based on the following criteria: - **Shortlist inclusion:** They appear on [Capterra's Accounting Software Shortlist](https://www.capterra.com/accounting-software/shortlist/)  - **Review volume:** Have at least 30 reviews in the past 24 months (August 2024 to August 2026) - **Rating floor:** Possess an overall Capterra rating of 4.0 or higher (based on data from the last two years).  I then verified the remaining products for a suitable e-commerce and retail fit for users by using reviewer signals and comparing them against the vendor’s own product positioning. This was confirmed by independent checks of each vendor’s website. The full details are explained in the methodology section. ## 1\. QuickBooks Enterprise: best for a dedicated retail edition with built-in reporting _QuickBooks Enterprise's Company Snapshot dashboard. (Source: Capterra)_ QuickBooks Enterprise is the highest-rated product, with an overall score of 4.56 out of five from reviewers. It boasts a dedicated retail edition that comes with some of the most powerful reporting for this focus area. This allows companies to manage retail-focused reporting alongside everyday accounting. While this is impressive, an important caveat is that some of the more advanced retail features, such as barcode scanning support and multi-level management, are restricted to more expensive Platinum and Diamond pricing tiers. The system has also retired its own point-of-sale functionality, which means budgeting for a third-party provider. Despite these considerations, user feedback surfaces many upsides. Reviews are highly positive about [QuickBooks Enterprise,](https://www.capterra.com/p/174984/QuickBooks-Enterprise/) praising its ease of use and broad functionality, and highlighting features such as inventory tracking.  #### Trial/Free Version - Free Trial - Free Version #### Device Compatibilty **Key features** - Retail-focused reporting across sales, inventory, and multi-location performance - Barcode scanning using compatible wired or wireless scanners (scanner hardware sold separately) - Multi-location management (Platinum tier and above) - Advanced pricing rules (Platinum tier and above) - Shopify, Amazon, and WooCommerce connectors **What users like about QuickBooks Enterprise:** Ease of use is the biggest advantage reviewers mention, though others also single out expansive reporting and features, as well as the quality of support. - Ease of use (61.4% of reviews) - Reporting (26.0%) - Feature depth (25.6%) - Support quality (20.3%) **What users dislike about QuickBooks Enterprise:** The extent of the feature coverage also works slightly against QuickBooks for some users, who criticize the complexity of the user interface and a steep learning curve. Pricing is also a notable complaint, though it isn’t a widespread concern. - UI and UX complexity (37.7%) - Learning curve (23.4%) - Pricing and scalability (22.1%) **What a verified Capterra reviewer says:** "The system provides strong reporting capabilities, efficient financial tracking, and helpful tools for managing inventory and users. While there is a learning curve at the beginning, it becomes much easier to use over time." Diva C., Administrative, Hospital and Healthcare _**Bottom line:**_ _QuickBooks Enterprise is highly rated and offers probably the most complete toolset for retail accounting, although it comes at a cost. The top features for retail sales are in the highest pricing tiers, which makes sense given the product's aim at midsize and enterprise customers. The complexity and depth of the system may prove a little tricky at first for smaller entities, but for growing or mature companies that need more dedicated reporting, it’s a strong fit._  ## 2\. Acumatica Cloud ERP: best for growing omnichannel retailers wanting native commerce connectors and a connected POS option _Acumatica Cloud ERP's project dashboard. (Source: Capterra)_ Acumatica Cloud ERP also offers a dedicated retail version that, alongside native e-commerce connectors for Amazon, Shopify, and BigCommerce, includes a built-in POS solution. Not only this but it also includes in-store sale POS integrations through Shopify, offering advantages to those selling offline.  This comes across in reviews with a number of comments referring to its practicality in consolidating workflows and multi-channel operations. This is also paired with praise about [Acumatica Cloud’s](https://www.capterra.com/p/96371/Acumatica-Cloud-ERP/) adaptability for new users and detailed reporting.  However, a consideration worth weighing up is the system's weight. As it primarily serves as a finance and accounting enterprise resource planning (ERP) system, it is designed for large-scale companies. This adds complexity, which reviewers sometimes note. Yet its adaptability, ability to unify work into a single system, and specialized retail functionality are worth considering if you are a scaling organization with sufficient technical resources.  #### Trial/Free Version - Free Trial - Free Version #### Device Compatibilty **Key features** - Native Amazon, Shopify, and BigCommerce connectors - POS connector (Acumatica POS, powered by partner Heuristyc) with retail hardware connections - Dedicated retail edition workflows **What users like about Acumatica Cloud ERP:** Users mention the ease of use often and highlight skills that can prove vital for retail and e-commerce such as reporting and integrations. - Ease of use (35.4% of reviews) - Reporting (31.0%) - Integrations (21.2%) **What users dislike about Acumatica Cloud ERP:** There aren’t any major complaints that surface from users of Acumatica Cloud ERP, although there are some that highlight difficulties mastering the depth and complexity of the system. - UI and UX complexity (21.2%) **What a verified Capterra reviewer says:** "What I like most about Acumatica ERP is the flexibility for it to adapt to our changing business needs. We have grown from a single-stream e-commerce business to a multi-channel retail distributor. Acumatica has allowed us to grow and scale with ease." Tyler S., Director of IT, Retail _**Bottom line:**_ _Acumatica can work very well for companies needing to manage multiple sales channels, or those looking to adopt a full ERP-level commerce stack. This may prove better suited to larger companies, or smaller ones able to commit to higher upfront technical and adaptation effort._ ## 3\. Oracle NetSuite: best for retailers ready for a full ERP with a native e-commerce module _NetSuite's home dashboard. (Source: Capterra)_ NetSuite is also an ERP, although built within the Oracle ecosystem. It also has a native e-commerce module, SuiteCommerce, that can connect with Shopify, Amazon, and eBay, albeit via NetSuite Connector. SuiteCommerce also provides InStore for physical sellers, which offers tablet-based checkout systems. A major point to consider is that both SuiteCommerce and NetSuite Connector need a license purchase. While this should factor into budgeting decisions, pricing doesn’t consistently come up as an issue among reviewers. Rather, there is widespread positivity about NetSuite’s comprehensive reporting and its ability to save users time.  There is also a high level of customization possible in [NetSuite](https://www.capterra.com/p/135757/NetSuite/), but this leads to a trade-off in ease of use and adoption. This is something reviewers tend to note as a downside. So, like many of the other ERP options on this list, it’s worth considering the upfront effort required to get established in the early stages. #### Trial/Free Version - Free Trial - Free Version #### Device Compatibilty **Key features** - Availability of a native e-commerce module  - Shopify, Amazon, and eBay connectors via NetSuite Connector (licensed separately) - Two NetSuite-built point-of-sale products, SuiteCommerce InStore and NetSuite Point of Sale (both licensed separately) **What users like about NetSuite:** Positive user reviews tend to highlight NetSuite’s reporting depth and time-saving capacity, with users appreciating its ability to unify work in one place as well as regular feature updates.   - Reporting (32.8%) - Time saving (24.2%) - Ease of use (23.6%) - Feature depth (21.7%) **What users dislike about NetSuite:** Like other ERPs on the list so far, user reviews of NetSuite emphasize difficulty in the learning curve and adapting to interface complexity. - UI and UX complexity (41.7%) - Learning curve (21.9%) **What a verified Capterra reviewer says:** "The amount of personalization you can set up with the Home Screen to organize cases and even run reports is a breeze. NetSuite is extremely usher \[sic\] friendly and I learned to use it with 1 week of training. I also love that it syncs perfectly with Shopify. Makes e-commerce a breeze!" Antonio R., Furniture _**Bottom line:**_ _Oracle NetSuite can be a good choice for retailers that have outgrown their tools and that want to embrace a full-scale ERP, with all of its complexities. It supports both in-store and online finance tools for commerce, with very high positive feedback for its reporting._  ## 4\. QuickBooks Online: best for small e-commerce sellers wanting the broadest connector reach _QuickBooks Online's home dashboard. (Source: Capterra)_ [QuickBooks Online](https://www.capterra.com/p/190778/QuickBooks-Online/) is a bit lighter than its Enterprise-focused sister product, but it still boasts a wide mix of capabilities for accountants handling e-commerce. Like many other QuickBooks products, it has a broad mix of integrations, notably with online POS services such as Shopify, Amazon, WooCommerce, and eBay.  It is more favored among smaller businesses than Enterprise and is offered at a cheaper starting price by comparison. However, it is worth noting that many retail-oriented features, such as inventory tracking, are available only in the Plus tier and above. All versions include automated sales tax calculations that cover more than 11,000 US jurisdictions for invoicing purposes.  #### Trial/Free Version - Free Trial - Free Version #### Device Compatibilty **Key features** - First-party QuickBooks-branded connectors for Shopify, Amazon, eBay, and Etsy - WooCommerce and BigCommerce are reachable through third-party App Store apps - Built-in inventory tracking (Plus and Advanced plans) - Automated sales tax rate calculation across 11,000-plus US jurisdictions (calculation only) **What users like about QuickBooks Online:** More users than any other product on this list mention ease of use as a benefit of QuickBooks online, which feeds into time saved on tasks. - Ease of use (65.3%) - Time saving (22.4%) - Reporting (20.4%) **What users dislike about QuickBooks Online:** Not many issues consistently arise among QuickBooks Online reviewers, but, like its bigger cousin, QuickBooks Enterprise, there is a slight tendency among users to have difficulties with interface complexity. - UI and UX complexity (36.3%) **What a verified Capterra reviewer says:** “QuickBooks Online allows me to manage my company's payroll and tax information, all accounting entries, employee information, and more seamlessly. This allows me to focus my time on my areas of expertise, growing our retail business instead of losing time in mundane accounting tasks.” Lori N., Owner, Retail _**Bottom line:**_ _QuickBooks Online, compared with Enterprise, is much more attuned to smaller companies that want a well-connected system for an accessible price. The system is amongst the easiest to use on this list, based on review data, and features like automated tax calculation could prove a time-saver._ ## 5\. Zoho Books: best for small sellers already using Zoho's other business apps _Zoho Books' home dashboard. (Source: Capterra)_ [Zoho Books](https://www.capterra.com/p/163115/Zoho-Books/) is the financial and accounting component of Zoho’s software ecosystem. This makes it a useful tool for businesses already using other systems in the family of products.  In this sense, it can prove a useful addition to an existing Zoho tech stack for handling finance. For retailers and e-commerce, it offers tools for tracking sales and purchase orders, recording transactions in multiple currencies, and inventory tracking.  It also boasts connectors with up to two Shopify stores, but only through its Elite plan. The elite plan also includes advanced inventory tools, such as barcode generation and scanning, for firms that handle higher quantities of physical stock. For extra functionality for e-commerce sales, users can also pair the financial module with [Zoho Inventory](https://www.capterra.com/p/146241/Zoho-Inventory/). This enables tracking to sales from Amazon, Etsy, and eBay. #### Trial/Free Version - Free Trial - Free Version #### Device Compatibilty **Key features** - Direct Shopify integration (up to two stores, Elite plan) - Amazon, Etsy, and eBay order sync via the separate Zoho Inventory product - Warehouse, serial number, and batch tracking (Elite plan) **What users like about Zoho Books:** User reviews generally find Zoho Books straightforward to deploy and manage, and rate its ability to deliver a wide range of features and connections to other software (notably other Zoho products). - Ease of use (44.4%) - Time saving (28.9%) - Feature depth (24.4%) - Integrations (22.2%) **What users dislike about Zoho Books:** A unique issue that appears among user feedback are comments about user and credit limit caps, which limit the number of bills and invoices that can be logged for each year. There are also several reviews that mention limitations in reporting customization. - Credit and limit caps (26.7%) - UI and UX complexity (22.2%) - Reporting gaps (20.0%) **What a verified Capterra reviewer says:** "Easy to maintain accounts. It is easy to maintain inventories and generate Purchase Orders. Affordable cost- wise." Jeyagowri K., Tutor, Education Management _**Bottom line:**_ _Zoho Books is a good fit for a retail company, big or small, already using one or more of Zoho’s other systems. For managing retail and e-commerce, it may work slightly better for larger or more mature businesses due to the pricing demands, especially if dealing with a high volume of transactions that might exceed limitation caps._ ## 6\. Odoo: best for retailers wanting POS, inventory, e-commerce, and accounting in one modular suite _Odoo's accounting overview screen. (Source: Capterra)_ [Odoo](https://www.capterra.com/p/135618/Odoo/) comes with a fully bundled ERP system, which is priced per user rather than per module. This means it combines features across different functions, connecting work such as accounting with tools for point-of-sale, inventory, and e-commerce in a single suite. This provides real advantages to those managing finance in retail or online sales environments. Features for inventory management allow real-time valuation (FIFO, average cost, and standard price) that feeds directly into accounting. This allows buyers to keep on top of the cost of goods sold (COGS) on the fly.   The combination of these features at a relatively low price point makes Odoo a decent prospect for retail and e-commerce accountants in both small and large businesses. While it contains many functions within its own infrastructure, it also includes the ability to work with third-party online markets such as Facebook and Amazon.  #### Trial/Free Version - Free Trial - Free Version #### Device Compatibilty **Key features** - First-party Point of Sale app - First-party Inventory app with automated, real-time valuation - First-party e-commerce app in the same suite - Inventory valuation feeds Accounting for the up-to-date cost of goods sold **What users like about Odoo:** The most common benefit reviewers mention when using Odoo is its ease of use, along with the suite's adaptability and customizability. - Ease of use (27.0%) **What users dislike about Odoo:** As with many deep, expansive systems like this, some users experience friction adapting to the UI, and some note that training materials and support can be lacking at times. - UI and UX complexity (19.9%) **What a verified Capterra reviewer says:** "I liked that Odoo provided interaction between the sales and stock modules. When a sale occurred, a delivery order was created, and I was also able to track products from within the warehouse. It really helped to bring focus on order processing speed and on the health of inventory." Dan A., Data Scientist, Food and Beverages _**Bottom line:**_ _Odoo is a great option for businesses just starting an e-commerce operation, thanks to its built-in accounting functionality. It combines many of the tools needed in a single, reasonably priced unit, allowing businesses to manage POS, inventory, e-commerce, and accounting on a single platform._ ## 7\. Sage Accounting: best for solo and small e-commerce sellers wanting simple marketplace bookkeeping _Sage Accounting's dashboard and companion mobile app. (Source: Capterra)_ [Sage Accounting](https://www.capterra.com/p/168740/Sage-One-UK/) is one of the few products that directly position themselves as a dedicated e-commerce accounting system rather than offering a bigger ERP or accounting platform with functionality included. It stands up to that claim, thanks to built-in tools for managing stock and inventory, marketplace integrations with Shopify, Amazon, and eBay, and multi-currency support for cross-border sales.  This is a good all-in-one system to use if you are only interested in focusing on the financial side of your e-commerce business. It is also backed up with very strong signals from user reviews about its ease of use and reporting capabilities. #### Trial/Free Version - Free Trial - Free Version #### Device Compatibilty **Key features** - eBay, Amazon, Shopify, and Etsy sync through the A2X marketplace partner - Cloud-based accounting with a companion mobile app **What users like about Sage Accounting:** Reviewers are very positive about the ease of use, especially the visibility of its reporting, with some users highlighting good connectivity with banking feeds.  - Ease of use (56.2%) - Reporting (25.8%) **What users dislike about Sage Accounting:** Some users find that Sage Accounting lacks or has limited features in some areas.  - Missing features (21.7%) **What a verified Capterra reviewer says:** "I've used Sage accounting for over 25 years, but is has changed over the years to an online version only. I find it a better program than QuickBooks. Easy to enter and bill customers as well as entering suppliers and inventory." Astrid A., Office manager and part owner, Construction _**Bottom line:**_ _Sage Accounting can work very well for smaller businesses that just want finance functionality with little else built in. This is a good option for those seeking a simpler system, especially if you don’t want to work with an all-encompassing ERP system._ ## What I found comparing marketplace and POS integrations across the 7 tools Almost all of the seven tools connect to major online marketplaces in some form or another. However, there are some key differences to note. The first is how these tools connect to major online marketplaces. Generally, the main difference is whether the connector is first or third-party. The distinction here is that first-party connectors are built and maintained by the vendor, while third-party options are sourced from partners or app stores within the software ecosystem. It is common to find connections to tools such as Shopify, Amazon, and eBay across this list, while native connections to smaller shopfronts like Etsy may require specific integrations to work properly. Many products across the list also paywall some of the best retail features in their more premium tiers. This is especially true for more advanced retail inventory management tools. Point-of-sale support varies more widely among the listed products, with four types appearing across the list. For instance, only Odoo has a first-party POS app within its own suite, working alongside accounting and inventory. Other ERPs, like NetSuite, offer POS as a separate paid module within the wider system, while Acumatica uses a partner to provide POS. Finally, QuickBooks, Zoho, and Sage, on the other hand, don’t feature a first-party POS at all; instead, they connect via third-party integrations or connectors. Here’s how the seven tools compare on marketplace connectors, POS support and inventory features, the factors that matter most for multi-channel e-commerce accounting.

Product

Marketplace connectors

POS support

Inventory features

Sales tax and multi-currency

QuickBooks Enterprise

Shopify, Amazon, WooCommerce

None (third-party needed)

Inventory tracking, barcode scanning, and multi-location (Platinum and above)

Manually configured sales tax groups, multi-currency

Acumatica Cloud ERP

Amazon, Shopify, BigCommerce (first-party)

Partner-provided (Heuristyc)

Dedicated inventory management module with management tools for purchase order, warehouse management, and distribution

Multi-currency accounting, cross-border transactions, automated sales tax via connectors.

NetSuite

Shopify, Amazon, eBay (first-party, via NetSuite Connector, licensed separately)

SuiteCommerce InStore and NetSuite POS (both licensed separately)

Automated inventory management, multi-location, demand planning, and lot/serial tracability

Domestic tax management is included, and multi-currency covers 190 currencies 

QuickBooks Online

Shopify, Amazon, eBay, Etsy (first-party); WooCommerce, BigCommerce (third-party apps)

None

Inventory tracking (Plus and Advanced)

Automated sales tax calculation across 11,000+ US jurisdictions

Zoho Books

Shopify, up to two stores (Elite, first-party); Amazon, Etsy, eBay via Zoho Inventory

None

Warehouse, serial and batch tracking (Elite)

Multi-currency, automated sales tax

Odoo

Third-party markets (e.g., Amazon, Facebook); first-party e-commerce app

First-party POS app

Real-time valuation (FIFO, average cost, standard price)

Multi-currency

Sage Accounting

eBay, Amazon, Shopify, Etsy via A2X (third-party)

None

Stock and inventory tools

Multi-currency

## How to choose the right e-commerce accounting software for your retail business Choosing the right accounting software for e-commerce and retail businesses depends a lot on the kind of sales you are managing. As seen on the list, many products can connect quite effectively with online storefronts, often without the need for extra paid add-ons. Another important point is business size. Many of the listed options are designed for larger, more established businesses and boast complete ERP functionality. These may not fit smaller businesses as well due to their pricing and the complexity of their functionality. Having looked over these products and their reviews, it is important to find something that scales with your current and project sales volume, especially when managing multiple channels. Having a good bookkeeping tool that doesn’t keep up with your inventory or requires effort to calculate sales tax as the volume increases could cause real bottlenecks to emerge.  As always, accounting system necessities shift across industries, [Capterra’s guide to accounting software by industry](https://www.capterra.com/resources/accounting-software-by-industry/) explains how to adjust sectoral needs around an accounting system.  ## Frequently asked questions What's the best accounting software for e-commerce and retail businesses? The best-rated product on this list is QuickBooks Enterprise, which has a 4.56 rating out of 5 from Capterra reviewers over the last two years. However, the right pick still depends on your business: QuickBooks Enterprise suits retailers wanting built-in retail reporting. If you have other needs, such as an ERP system that can handle sales, marketing, and finance, you may need to consider products with a broader capacity set. What software do retail stores use for accounting? Retail stores commonly use retail accounting software that combines bookkeeping with point-of-sale and inventory tracking, rather than a standalone ledger tool. Is QuickBooks good for a retail or e-commerce business? Yes, with a caveat. QuickBooks Online suits small e-commerce sellers who mainly need Shopify support and connector apps for other marketplaces, while QuickBooks Enterprise suits retailers who want dedicated retail reporting, though its deepest retail features require the Platinum tier. How do I choose accounting software for an e-commerce business? Start with how you sell: which marketplaces you're on, whether you need built-in inventory, and whether sales tax spans multiple states. Does accounting software integrate with my online store (Shopify, Amazon, Etsy)? Yes, though how each product connects varies. Shopify has the widest reach on this list, either as a direct integration or through a first-party connector. Amazon, Etsy, and eBay are all reachable for several products, sometimes through a first-party QuickBooks or NetSuite connector, sometimes through a separate product like Zoho Inventory. How much does accounting software cost for a small retail or e-commerce business? Capterra's own [pricing report](https://www.capterra.com/resources/accounting-software-cost/) estimates that businesses budget around $400 a month for accounting software, or $100 per user per month, depending on the pricing scheme they choose. Can accounting software handle retail POS and inventory as well as bookkeeping? It depends on the product. In the case of ERP software, POS functionality is either offered as a first-party feature or via add-ons and partner plugins. Dedicated accounting or bookkeeping software, on the other hand, may not always have these features, focusing instead on simply tracking transactions. Does Xero work for e-commerce businesses? Yes, Xero connects with some e-commerce platforms and marketplaces, though it isn't one of the seven products in this article. The list only includes tools that met the review, rating, and e-commerce-fit criteria in the methodology. Can I use Sage 50 for an online store? Yes, typically through a connector or integration partner. Sage 50 is a separate product from Sage Accounting (the seventh product on this list), which is deployed as installed software rather than a cloud-based setup. Confirm which store platforms are supported for your edition and region. Does Wave work with Shopify, Amazon, or Etsy? Although it is not included on this list, it can, though often through a third-party sync app or automation tool rather than a direct integration. The list only includes tools that met the review, rating, and e-commerce-fit criteria in the methodology. Is there free accounting software for e-commerce? Yes, some accounting products offer a free version or a free trial. Free plans often limit inventory tracking, marketplace connectors and user numbers, so compare those limits against your sales channels before committing. You can also compare [free versions of accounting software](https://www.capterra.com/accounting-software/?pricing_options=FREE_VERSION) directly on our dedicated page. ## Capterra's 2026 Software Buying Trends Report ### Download our 2026 Software Buying Trends Report to see how successful software adopters avoid disappointment and how your business can, too. * * * Looking for Accounting software? Check out Capterra's list of the [best Accounting software](https://www.capterra.com/accounting-software/) solutions. ### Was this article helpful? * * * ## About the Author [### David Jani](https://www.capterra.com/resources/author/david-jani/) David is an analyst with 5 years of experience covering technology for accounting, cybersecurity, and other business uses. His insights draw on 20+ studies and 2.5 million Capterra reviews. ### RELATED READING - [My 7 Best Billing and Invoicing Software Picks for Small Businesses in 2026, Based on 1,461 Capterra Reviews](https://www.capterra.com/resources/billing-invoicing-software-smbs/) - [Does AI-Powered Accounting Software Actually Save Time?](https://www.capterra.com/resources/ai-accounting-software-report/) - [Accounts Payable and Receivable Software: Key Differences and How to Choose](https://www.capterra.com/resources/accounts-payable-vs-accounts-receivable/) - [Bookkeeping vs. Accounting Software: Which One Is the Best Choice for You?](https://www.capterra.com/resources/bookkeeping-vs-accounting/) - [5 Types of Accounting Software and How To Choose the Right One](https://www.capterra.com/resources/types-of-accounting/) - [What is the Difference Between Accounting and Financial Management Software?](https://www.capterra.com/resources/accounting-vs-financial-management/) - [Accounting Trends in 2026: How AI Is Changing Work, Skills, and Strategy](https://www.capterra.com/resources/accounting-trends-ai-software-changing-work/) - [Bookkeeper vs. Accounts Payable Software: Which One Should You Choose?](https://www.capterra.com/resources/category-compare-bookkeeper-vs-accounts-payable-software/) - [Switching Accounting Software: Common Risks to Avoid in 2026](https://www.capterra.com/resources/switching-accounting-software-problems-risks/) I sourced this list from Capterra's Accounting Software Shortlist, dated January 2, 2026, which started with 23 candidates. Reviews were assessed from August, 2024 to August, 2026. All ratings, review counts, and reviewer themes reflect that window; pricing was checked against vendor sites and Capterra's own product pages in August 2026. To be included in this list, each product had to: 1. Appear on Capterra's Accounting Software Shortlist. 2. Carry at least 30 verified Capterra reviews in the trailing 24 months. 3. Hold an overall rating of 4.0 or higher over that same period. 4. Show verified e-commerce or retail fit, checked directly against the vendor's own site and Capterra product page, not the review dataset's industry field or review text alone, whether that fit came from native functionality, a first-party connector, or an established, named integration partner. I ranked the seven qualifying products by overall rating in descending order, with ties broken by review count. **Editorial independence:** Products are selected and ranked based on an objective methodology. While some vendors may pay Capterra when they receive web traffic or leads, this does not influence our selection or analysis.